The Parasitic Fingerprint: Tracing Infection to Host Illness

Year : 2026 | Volume : 03 | Issue : 01 | Page : 29 50
    By

    Shubham Sah,

  • Deepa Kumari,

  1. Student, Department of Biological Science, Indian Institute of Science Education and Research, Thiruvananthapuram, Kerala, India
  2. Student, Department of Biochemistry, Central University of Haryana, Mahendergarh, Haryana, India

Abstract

Parasitic infections remain a major global health burden, causing significant morbidity and mortality, particularly in tropical and subtropical regions. A critical aspect of disease pathogenesis is the unique molecular and cellular imprint left by parasites in their hosts, termed the “parasitic fingerprint.” These fingerprints encompass parasite-derived proteins, nucleic acids, metabolites, extracellular vesicles, and host responses, including gene expression changes, cytokine profiles, and metabolic adaptations. Advances in multi-omics technologies, which integrate genomics, transcriptomics, proteomics, metabolomics, and epigenomics, have enabled high-resolution mapping of host–parasite interactions, revealing strategies parasites employ to invade, survive, and manipulate host systems. Molecular fingerprints offer clinical relevance by providing sensitive diagnostic markers, informing disease prognosis, guiding vaccine design, and enabling targeted therapeutic interventions. Case studies in malaria, leishmaniasis, trypanosomiasis, and helminth infections demonstrate the utility of fingerprints in linking parasite activity to tissue-specific pathology and host immune modulation. Integration of these insights into emerging technologies, such as single-cell multi-omics, spatial transcriptomics, and artificial intelligence, holds promise for personalized medicine approaches, improving disease management and reducing the global burden of parasitic diseases.

Keywords: Parasitic fingerprint, host-parasite interactions, multi-omics, diagnostics, therapeutics, malaria, leishmaniasis, trypanosomiasis, helminths, precision medicine

[This article belongs to Recent Trends in Infectious Diseases ]

How to cite this article:
Shubham Sah, Deepa Kumari. The Parasitic Fingerprint: Tracing Infection to Host Illness. Recent Trends in Infectious Diseases. 2026; 03(01):29-50.
How to cite this URL:
Shubham Sah, Deepa Kumari. The Parasitic Fingerprint: Tracing Infection to Host Illness. Recent Trends in Infectious Diseases. 2026; 03(01):29-50. Available from: https://journals.stmjournals.com/rtid/article=2026/view=238433


References

  1. Ward PK, Mohammed MA, Ayana Heda M, Broadfield LA, Dahlberg P, Dana D, Leta GT, Mekonnen Z, Nabatte B, Kabatereine N, Orrling KM. An artificial intelligence-powered digital pathology platform to support large-scale deworming programs against soil-transmitted helminthiasis and intestinal schistosomiasis in resource-limited settings. PLOS Neglected Tropical Diseases. 2026 Mar 18;20(3):e0013432.
  2. Edoa JR, Adégbitè BR, Honkpéhèdji YJ, Zinsou JF, Boussougou-Sambe ST, Woldearegai TG, Mordmüller B, Adegnika AA, Dejon‑Agobé JC. Epidemiology of soil-transmitted helminth infections and the differential effect of treatment on the distribution of helminth species in rural areas of Gabon. Tropical medicine and health. 2024 Jan 2;52(1):3.
  3. Kaminsky R, Mäser P. Global impact of parasitic infections and the importance of parasite control. Frontiers in Parasitology. 2025 Mar 10;4:1546195.
  4. Maizels RM, Yazdanbakhsh M. Immune regulation by helminth parasites: cellular and molecular mechanisms. Nature Reviews Immunology. 2003 Sep 1;3(9):733–44.
  5. Allen JE, Maizels RM. Diversity and dialogue in immunity to helminths. Nature Reviews Immunology. 2011 Jun;11(6):375–88.
  6. Torgerson PR, Macpherson CN. The socioeconomic burden of parasitic zoonoses: global trends. Veterinary parasitology. 2011 Nov 24;182(1):79–95.
  7. Mishra R, Panda SK, Sahoo PK, Bal MS, Satapathy AK. Increased Fas ligand expression of peripheral B‐1 cells correlated with CD 4+ T‐cell apoptosis in filarial‐infected patients. Parasite Immunology. 2017 Apr;39(4):e12421.
  8. Dobson A, et al. Epidemiology of parasitic infections and molecular signatures of host response. Parasit Vectors. 2020;13:450.
  9. Loke P, Allen JE. The parasitic worm host–parasite interface. Nat Rev Immunol. 2004;4(1):1–12. doi:10.1038/nri1316
  10. Shanmugam S, Nichols AK, Saravanabalaji D, Welsch C, Yi M. HCV NS5A dimer interface residues regulate HCV replication by controlling its self-interaction, hyperphosphorylation, subcellular localization and interaction with cyclophilin A. PLoS pathogens. 2018 Jul 23;14(7):e1007177.
  11. Velleman Y, Blair L, Fleming F, Fenwick A. Water-, sanitation-, and hygiene-related diseases. InInfectious Diseases 2023 Feb 8 (pp. 189-219). New York, NY: Springer US.
  12. Aksoy S, et al. Host–parasite molecular fingerprinting: implications for diagnostics and therapeutics. Front Cell Infect Microbiol. 2021;11:703412. doi:10.3389/fcimb.2021.703412
  13. Walker MJ, et al. Immune modulation by parasites: molecular mechanisms and clinical implications. Clin Exp Immunol. 2019;196(3):315–330.
  14. Figueiredo C, et al. Proteomic insights into host–parasite interactions. Mol Biochem Parasitol. 2022;248:111525.
  15. Antony B, et al. Parasitic infection-induced transcriptomic signatures in humans. Nat Commun. 2021;12:1547. doi:10.1038/s41467-021-21842-2
  16. Maizels RM, McSorley HJ. Regulation of the host immune system by helminth parasites. Journal of Allergy and Clinical Immunology. 2016 Sep 1;138(3):666–75.
  17. Ward PK, Mohammed MA, Ayana Heda M, Broadfield LA, Dahlberg P, Dana D, Leta GT, Mekonnen Z, Nabatte B, Kabatereine N, Orrling KM. An artificial intelligence-powered digital pathology platform to support large-scale deworming programs against soil-transmitted helminthiasis and intestinal schistosomiasis in resource-limited settings. PLOS Neglected Tropical Diseases. 2026 Mar 18;20(3):e0013432.
  18. Desowitz RS. The malaria capers: more tales of parasites and people, research and reality. WW Norton & Company; 1993.
  19. Maizels RM. Parasitic fingerprints: molecular signatures and the immunological footprint of helminth infections. Curr Opin Immunol. 2020;66:1–8.
  20. Kaminsky R, Mäser P. Global impact of parasitic infections and the importance of parasite control. Frontiers in Parasitology. 2025 Mar 10;4:1546195.
  21. Maizels RM, Yazdanbakhsh M. Immune regulation by helminth parasites: Cellular and molecular mechanisms. Nat Rev Immunol. 2003;3:733–744. Available from: https://www.nature.com/articles/nri1183
  22. Mishra R, Panda SK, Sahoo PK, Bal MS, Satapathy AK. Increased Fas ligand expression of peripheral B‐1 cells correlated with CD 4+ T‐cell apoptosis in filarial‐infected patients. Parasite Immunology. 2017 Apr;39(4):e12421.
  23. Olano JP, Weller PF, Guerrant RL, Walker DH. Principles of parasitism: host–parasite interactions. Tropical infectious diseases: Principles, pathogens and practice. 2011 Apr 29:1
  24. Desowitz RS. The malaria capers: more tales of parasites and people, research and reality. WW Norton & Company; 1993.
  25. Petri WA Jr, Haque R. Host–parasite interactions in protozoan infections. Annu Rev Pathol. 2019;14:353–379. doi:10.1146/annurev-pathmechdis-012418-012754
  26. Allen JE, Maizels RM. Diversity and dialogue in immunity to helminths. Nature Reviews Immunology. 2011 Jun;11(6):375–88.
  27. Shanmugam S, Nichols AK, Saravanabalaji D, Welsch C, Yi M. HCV NS5A dimer interface residues regulate HCV replication by controlling its self-interaction, hyperphosphorylation, subcellular localization and interaction with cyclophilin A. PLoS pathogens. 2018 Jul 23;14(7):e1007177.
  28. Chulanetra M, Chaicumpa W. Revisiting the mechanisms of immune evasion employed by human parasites. Frontiers in cellular and infection microbiology. 2021 Jul 29;11:702125.
  29. Babunovic GH. Improving and understanding macrophage restriction of Mycobacterium tuberculosis infection. Harvard University; 2022.
  30. Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA. The genome of the blood fluke Schistosoma mansoni. Nature. 2009 Jul 16;460(7253):352-8.
  31. Mu Y, Zumuk CP, Jones MK, Cai P. Leveraging single-cell RNA-seq in helminthology. Trends in Parasitology. 2025 Dec 4.
  32. Aksoy S. Control of tsetse flies and trypanosomes using molecular genetics. Veterinary parasitology. 2003 Jul 25;115(2):125-45.
  33. Figueiredo J, Santos RB, Figueiredo A. Exploring Plant-Pathogen Interactions through Subcellular Proteomics: Insights and Challenges. InPlant Pathogen Interaction 2024 Jan 6 (pp. 287-310). Singapore: Springer Nature Singapore.
  34. Casadevall A, Pirofski LA. Host-pathogen interactions: basic concepts of microbial commensalism, colonization, infection, and disease. Infection and immunity. 2000 Dec 1;68(12):6511-8.
  35. Hotez PJ. Reducing the global burden of human parasitic diseases. Comparative Parasitology. 2002 Jul;69(2):140-5.
  36. Maizels RM, Smits HH, McSorley HJ. Modulation of host immunity by helminths: the expanding repertoire of parasite effector molecules. Immunity. 2018 Nov 20;49(5):801-18.
  37. Blackwell JM. Role of macrophage complement and lectin-like receptors in binding Leishmania parasites to host macrophages. Immunology letters. 1985 Jan 1;11(3-4):227-32.
  38. Dubey JP, Jones JL. Toxoplasma gondii infection in humans and animals in the United States. International journal for parasitology. 2008 Sep 1;38(11):1257-78.
  39. Maizels RM. Parasitic helminth infections and the control of human allergic and autoimmune disorders. Clinical Microbiology and Infection. 2016 Jun 1;22(6):481-6.
  40. Vasoo S, Pritt BS. Molecular diagnostics and parasitic disease. Clinics in Laboratory Medicine. 2013 Sep 1;33(3):461-503
  41. Smith JD. The role of PfEMP1 adhesion domain classification in Plasmodium falciparum pathogenesis research. Molecular and biochemical parasitology. 2014 Jul 1;195(2):82-7.
  42. Menezes JP, Almeida TF, Petersen AL, Guedes CE, Mota MS, Lima JG, Palma LC, Buck GA, Krieger MA, Probst CM, Veras PS. Proteomic analysis reveals differentially expressed proteins in macrophages infected with Leishmania amazonensis or Leishmania major. Microbes and Infection. 2013 Jul 1;15(8-9):579-91
  43. Florens L, Washburn MP, Raine JD, Anthony RM, Grainger M, Haynes JD, Moch JK, Muster N, Sacci JB, Tabb DL, Witney AA. A proteomic view of the Plasmodium falciparum life cycle. Nature. 2002 Oct 3;419(6906):520-6.
  44. Gomez MA, Contreras I, Hallé M, Tremblay ML, McMaster RW, Olivier M. Leishmania GP63 alters host signaling through cleavage-activated protein tyrosine phosphatases. Science signaling. 2009 Sep 29;2(90):ra58-.
  45. Sahoo MP. Experimenatal studies on murine host inflammatory responses to malarial parasite-derived HMGB1.
  46. Hunter CA, Sibley LD. Modulation of innate immunity by Toxoplasma gondii virulence effectors. Nature Reviews Microbiology. 2012 Nov;10(11):766-78.
  47. Minarovits J. Microbe-induced epigenetic alterations in host cells: the coming era of patho-epigenetics of microbial infections: a review. Acta microbiologica et immunologica Hungarica. 2009 Mar 1;56(1):1-9.
  48. Diray-Arce J, Conti MG, Petrova B, Kanarek N, Angelidou A, Levy O. Integrative metabolomics to identify molecular signatures of responses to vaccines and infections. Metabolites. 2020 Nov 30;10(12):492.
  49. Sikder S, Pierce D, Sarkar ER, McHugh C, Quinlan KG, Giacomin P, Loukas A. Regulation of host metabolic health by parasitic helminths. Trends in Parasitology. 2024 May 1;40(5):386-400.
  50. Regan JC, Brandão AS, Leitão AB, Mantas Dias AR, Sucena É, Jacinto A, Zaidman-Rémy A. Steroid hormone signaling is essential to regulate innate immune cells and fight bacterial infection in Drosophila. PLoS pathogens. 2013 Oct 24;9(10):e1003720.
  51. Silverman JM, Clos J, Horakova E, Wang AY, Wiesgigl M, Kelly I, Lynn MA, McMaster WR, Foster LJ, Levings MK, Reiner NE. Leishmania exosomes modulate innate and adaptive immune responses through effects on monocytes and dendritic cells. The Journal of Immunology. 2010 Nov;185(9):5011-22.
  52. Ortega-Pajares A, Rogerson SJ. The rough guide to monocytes in malaria infection. Frontiers in immunology. 2018 Dec 7;9:2888.
  53. Rezende LG, Barros MD, Moreira OB, de Oliveira MA, Chellini PR, Jaeger LH. Analytical Approaches for Parasitic Biomarkers Diseases Discovery: Trends and Perspectives of Metabolomics in the Clinical Laboratory. Critical Reviews in Analytical Chemistry. 2025 Oct 31:1-7.
  54. Tonkin-Hill GQ, Trianty L, Noviyanti R, Nguyen HH, Sebayang BF, Lampah DA, Marfurt J, Cobbold SA, Rambhatla JS, McConville MJ, Rogerson SJ. The Plasmodium falciparum transcriptome in severe malaria reveals altered expression of genes involved in important processes including surface antigen–encoding var genes. PLoS Biology. 2018 Mar 12;16(3):e2004328.
  55. Cross GA. Antigenic variation in trypanosomes. Proceedings of the Royal Society of London. Series B. Biological Sciences. 1978 Jun 5;202(1146):55-72.
  56. Silvie O, Goetz K, Matuschewski K. A sporozoite asparagine-rich protein controls initiation of Plasmodium liver stage development. PLoS pathogens. 2008 Jun 13;4(6):e1000086.
  57. Sarfraz RA, Rizwan HM, Nazish N, Taseer MS, Hassan SS. Integrative Omics in Parasitology. InOmics Approaches in Veterinary Parasitology 2024 Nov 28 (pp. 109-123). CRC Press.
  58. Cobbold SA, V Tutor M, Frasse P, McHugh E, Karnthaler M, Creek DJ, Odom John A, Tilley L, Ralph SA, McConville MJ. Non‐canonical metabolic pathways in the malaria parasite detected by isotope‐tracing metabolomics. Molecular Systems Biology. 2021 Apr 1;17(4):MSB202010023.
  59. Maizels RM, Smits HH, McSorley HJ. Modulation of host immunity by helminths: the expanding repertoire of parasite effector molecules. Immunity. 2018 Nov 20;49(5):801-18.
  60. White NJ. Malaria parasite clearance. Malaria journal. 2017 Feb 23;16(1):88.
  61. Cowman AF, Tonkin CJ, Tham WH, Duraisingh MT. The molecular basis of erythrocyte invasion by malaria parasites. Cell host & microbe. 2017 Aug 9;22(2):232-45.
  62. Menezes TP, Machado BA, Toledo DN, Dos Santos PV, Ribeiro L, Talvani A. Insights into CX3CL1/Fractalkine during experimental Trypanosoma cruzi infection. Parasitology international. 2022 Apr 1;87:102530.
  63. Burke ML, Jones MK, Gobert GN, Li YS, Ellis MK, McManus DP. Immunopathogenesis of human schistosomiasis. Parasite immunology. 2009 Apr;31(4):163-76.
  64. Hotez PJ. Human parasitology and parasitic diseases: heading towards 2050. Advances in parasitology. 2018 Jan 1;100:29-38.
  65. Idro R, Jenkins NE, Newton CR. Pathogenesis, clinical features, and neurological outcome of cerebral malaria. The Lancet Neurology. 2005 Dec 1;4(12):827-40.
  66. Olivier M, Gregory DJ, Forget G. Subversion mechanisms by which Leishmania parasites can escape the host immune response: a signaling point of view. Clinical microbiology reviews. 2005 Apr;18(2):293-305.
  67. Gazzinelli RT, et al. Host immune responses and pathology in parasitic infections. Nat Rev Immunol. 2014;14(4):219–231. Available from: https://www.nature.com/articles/nri3630
  68. Fallon PG, Mangan NE. Suppression of TH2-type allergic reactions by helminth infection. Nature Reviews Immunology. 2007 Mar;7(3):220-30.
  69. Clark IA, Schofield L. Pathogenesis of malaria. Parasitology Today. 2000 Oct 1;16(10):451-4.
  70. Afrin F, Khan I, Hemeg HA. Leishmania-host interactions—an epigenetic paradigm. Frontiers in immunology. 2019 Mar 22;10:492.
  71. Andrade LO, Andrews NW. The Trypanosoma cruzi–host-cell interplay: location, invasion, retention. Nature Reviews Microbiology. 2005 Oct 1;3(10):819-23.
  72. Fabre V, Beiting DP, Bliss SK, Gebreselassie NG, Gagliardo LF, Lee NA, Lee JJ, Appleton JA. Eosinophil deficiency compromises parasite survival in chronic nematode infection. The Journal of Immunology. 2009 Feb;182(3):1577-83.
  73. Jang JC, Chen G, Wang SH, Barnes MA, Chung JI, Camberis M, Le Gros G, Cooper PJ, Steel C, Nutman TB, Lazar MA. Macrophage-derived human resistin is induced in multiple helminth infections and promotes inflammatory monocytes and increased parasite burden. PLoS pathogens. 2015 Jan 8;11(1):e1004579.
  74. Pearce EJ, MacDonald AS. The immunobiology of schistosomiasis. Nature Reviews Immunology. 2002 Jul 1;2(7):499-511.
  75. Baer M, Sawa T, Flynn P, Luehrsen K, Martinez D, Wiener-Kronish JP, Yarranton G, Bebbington C. An engineered human antibody fab fragment specific for Pseudomonas aeruginosa PcrV antigen has potent antibacterial activity. Infection and immunity. 2009 Mar;77(3):1083-90.
  76. Parody N, Soto M, Requena JM, Alonso C. Adjuvant guided polarization of the immune humoral response against a protective multicomponent antigenic protein (Q) from Leishmania infantum. A CpG+ Q mix protects Balb/c mice from infection. Parasite immunology. 2004 Jun;26(6‐7):283-93.
  77. Kaye PM, Cruz I, Picado A, Van Bocxlaer K, Croft SL. Leishmaniasis immunopathology—impact on design and use of vaccines, diagnostics and drugs. InSeminars in immunopathology 2020 Jun (Vol. 42, No. 3, pp. 247-264). Berlin/Heidelberg: Springer Berlin Heidelberg.
  78. Rassi Jr A, Rassi A, Rassi SG. Predictors of mortality in chronic Chagas disease: a systematic review of observational studies. Circulation. 2007 Mar 6;115(9):1101-8.
  79. Maizels RM, Yazdanbakhsh M. Immune regulation by helminth parasites: cellular and molecular mechanisms. Nature Reviews Immunology. 2003 Sep 1;3(9):733-44.
  80. World Health Organization. World malaria report 2022. World Health Organization; 2022 Dec 8.
  81. Cowman AF, Healer J, Marapana D, Marsh K. Malaria: biology and disease. Cell. 2016 Oct 20;167(3):610-24.
  82. White NJ. Malaria parasite clearance. Malaria journal. 2017 Feb 23;16(1):88.
  83. SenGupta SB, Delhanty JD. Preimplantation genetic diagnosis: recent triumphs and remaining challenges. Expert Review of Molecular Diagnostics. 2012 Jul 1;12(6):585-92.
  84. Chen L, Chen Y, Zhang D, Hou M, Yang B, Zhang F, Zhang W, Luo X, Ji M, Wu G. Protection and immunological study on two tetraspanin‐derived vaccine candidates against schistosomiasis japonicum. Parasite immunology. 2016 Oct;38(10):589-98.
  85. Nikulkova M, Abdrabou W, Carlton JM, Idaghdour Y. Exploiting integrative metabolomics to study host–parasite interactions in Plasmodium infections. Trends in parasitology. 2024 Apr 1;40(4):313-23.
  86. Fairhurst RM, Dondorp AM. Artemisinin-resistant Plasmodium falciparum malaria. Microbiology spectrum. 2016 Jun 30;4(3):10-128.
  87. Simner PJ, Miller S, Carroll KC. Understanding the promises and hurdles of metagenomic next-generation sequencing as a diagnostic tool for infectious diseases. Clinical Infectious Diseases. 2018 Feb 15;66(5):778-88.
  88. Doolan DL, Hoffman SL. Multi-gene vaccination against malaria: a multistage, multi-immune response approach. Parasitology Today. 1997 May 1;13(5):171-8.
  89. Gomez MA, Contreras I, Hallé M, Tremblay ML, McMaster RW, Olivier M. Leishmania GP63 alters host signaling through cleavage-activated protein tyrosine phosphatases. Science signaling. 2009 Sep 29;2(90):ra58-.
  90. Rezende LG, Barros MD, Moreira OB, de Oliveira MA, Chellini PR, Jaeger LH. Analytical Approaches for Parasitic Biomarkers Diseases Discovery: Trends and Perspectives of Metabolomics in the Clinical Laboratory. Critical Reviews in Analytical Chemistry. 2025 Oct 31:1-7.
  91. Tuteja R. Malaria− an overview. The FEBS journal. 2007 Sep;274(18):4670-9.
  92. Hotez PJ, Brindley PJ, Bethony JM, King CH, Pearce EJ, Jacobson J. Helminth infections: the great neglected tropical diseases. The Journal of clinical investigation. 2008 Apr 1;118(4):1311-21.
  93. Moorthy VS, Good MF, Hill AV. Malaria vaccine developments. The lancet. 2004 Jan 10;363(9403):150-6.
  94. Mu Y, McManus DP, Gordon CA, Cai P. Parasitic helminth-derived microRNAs and extracellular vesicle cargos as biomarkers for helminthic infections. Frontiers in Cellular and Infection Microbiology. 2021 Jun 25;11:708952.
  95. Trager W. Living together: the biology of animal parasitism. Springer Science & Business Media; 2012 Dec 6.
  96. Jyotisha, Qureshi R, Qureshi IA. Development of a multi-epitope vaccine candidate for leishmanial parasites applying immunoinformatics and in vitro approaches. Frontiers in Immunology. 2023 Nov 15;14:1269774.
  97. Sajid MS, Ghazanfer S, Rizwan HM, Bajwa MH, Anwar N, Saqib M. Introduction to Omics Technologies. InOmics Approaches in Veterinary Parasitology 2024 Nov 28 (pp. 22-46). CRC Press.
  98. Freitas-Junior LH, Hernandez-Rivas R, Ralph SA, Montiel-Condado D, Ruvalcaba-Salazar OK, Rojas-Meza AP, Mâncio-Silva L, Leal-Silvestre RJ, Gontijo AM, Shorte S, Scherf A. Telomeric heterochromatin propagation and histone acetylation control mutually exclusive expression of antigenic variation genes in malaria parasites. Cell. 2005 Apr 8;121(1):25-36.
  99. Maizels RM, Yazdanbakhsh M. Immune regulation by helminth parasites: cellular and molecular mechanisms. Nature Reviews Immunology. 2003 Sep 1;3(9):733-44.
  100. Cowman AF, Healer J, Marapana D, Marsh K. Malaria: biology and disease. Cell. 2016 Oct 20;167(3):610-24.
  101. White NJ. Severe malaria. Malaria journal. 2022 Oct 6;21(1):284.
  102. Miller LH, Good MF, Milon G. Malaria pathogenesis. Science. 1994 Jun 24;264(5167):1878-83.
  103. Colvin HN, Joice Cordy R. Insights into malaria pathogenesis gained from host metabolomics. PLoS Pathogens. 2020 Nov 12;16(11):e1008930.
  104. Gomez MA, Contreras I, Hallé M, Tremblay ML, McMaster RW, Olivier M. Leishmania GP63 alters host signaling through cleavage-activated protein tyrosine phosphatases. Science signaling. 2009 Sep 29;2(90):ra58-.
  105. Kaye P, Scott P. Leishmaniasis: complexity at the host–pathogen interface. Nature reviews microbiology. 2011 Aug;9(8):604-15.
  106. Handman E, Bullen DV. Interaction of Leishmania with the host macrophage. Trends in parasitology. 2002 Aug 1;18(8):332-4.
  107. Kennedy PG, Rodgers J. Clinical and neuropathogenetic aspects of human African trypanosomiasis. Frontiers in immunology. 2019 Jan 25;10:39.
  108. Gupta S, Braun M, Tischler ND, Stoltz M, Sundström KB, Björkström NK, Ljunggren HG, Klingström J. Hantavirus-infection confers resistance to cytotoxic lymphocyte-mediated apoptosis. PLoS pathogens. 2013 Mar 28;9(3):e1003272.
  109. Rassi Jr A, Rassi A, Marin-Neto JA. Chagas disease. InNeglected Tropical Diseases-Latin America and the Caribbean 2015 May 8 (pp. 45-71). Vienna: Springer Vienna.
  110. Hotez PJ, Bethony JM, Diemert DJ, Pearson M, Loukas A. Developing vaccines to combat hookworm infection and intestinal schistosomiasis. Nature Reviews Microbiology. 2010 Nov;8(11):814-26.
  111. McSorley HJ, Maizels RM. Helminth infections and host immune regulation. Clinical microbiology reviews. 2012 Oct;25(4):585-608.
  112. MacDonald AS, Araujo MI, Pearce EJ. Immunology of parasitic helminth infections. Infection and immunity. 2002 Feb;70(2):427-33.
  113. Nikulkova M, Abdrabou W, Carlton JM, Idaghdour Y. Exploiting integrative metabolomics to study host–parasite interactions in Plasmodium infections. Trends in parasitology. 2024 Apr 1;40(4):313-23.
  114. Felipin KP, Paloschi MV, Silva MD, Ikenohuchi YJ, Santana HM, Setubal SD, Rego CM, Lopes JA, Boeno CN, Serrath SN, De Medeiros EH. Transcriptomics analysis highlights potential ways in human pathogenesis in Leishmania braziliensis infected with the viral endosymbiont LRV1. PLOS Neglected Tropical Diseases. 2024 May 14;18(5):e0012126.
  115. Agbo EE, Majiwa PA, Claassen HJ, te Pas MF. Molecular variation of Trypanosoma brucei subspecies as revealed by AFLP fingerprinting. Parasitology. 2002 Apr;124(4):349-58.
  116. Marcilla A, Sánchez-López CM, González-Arce A, Cortés A, Bernal D. Understanding the extracellular vesicles in helminths. InRecent Advances in Parasitomics: Implications for Parasite and Vector Research 2025 Jan 26 (pp. 247-272). Cham: Springer Nature Switzerland.
  117. Simon S, Wagner MA, Rothmeier E, Müller‐Taubenberger A, Hilbi H. Icm/Dot‐dependent inhibition of phagocyte migration by L egionella is antagonized by a translocated Ran GTPase activator. Cellular microbiology. 2014 Jul;16(7):977-92.
  118. O’Brien XM, Reichner JS. Neutrophil integrins and matrix ligands and NET release. Frontiers in immunology. 2016 Sep 19;7:363.
  119. Oliveira CS, Negut I. Precision Medicine and Omics Approaches for Managing Infectious Diseases: Technologies, Applications, and Current Achievements. InAI and Precision Medicine in Infectious Disease Management 2025 Dec 2 (pp. 71-97). CRC Press.
  120. Hildebrandt F, Iturritza MU, Zwicker C, Vanneste B, Van Hul N, Semle E, Quin J, Pascini T, Saarenpää S, He M, Andersson ER. Host-pathogen interactions in the Plasmodium-infected mouse liver at spatial and single-cell resolution. Nature Communications. 2024 Aug 19;15(1):7105.
  121. Reid AJ, Talman AM, Bennett HM, Gomes AR, Sanders MJ, Illingworth CJ, Billker O, Berriman M, Lawniczak MK. Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites. elife. 2018 Mar 27;7:e33105.
  122. Chahine Z, Le Roch KG. Decrypting the complexity of the human malaria parasite biology through systems biology approaches. Frontiers in systems biology. 2022 Sep 16;2:940321.
  123. Bamarni SS, Said MB. Genomic approaches in parasitic diagnosis. InOmics Approaches in Veterinary Parasitology 2024 Nov 28 (pp. 47-61). CRC Press.
  124. Gramberg S, Puckelwaldt O, Schmitt T, Lu Z, Haeberlein S. Spatial transcriptomics of a parasitic flatworm provides a molecular map of drug targets and drug resistance genes. Nature Communications. 2024 Oct 16;15(1):8918.
  125. Hollin T, Chahine Z, Le Roch KG. Epigenetic regulation and chromatin remodeling in malaria parasites. Annual review of microbiology. 2023 Sep 15;77(1):255-76.
  126. Ishibashi K, Mawatari N, Miyashita S, Kishino H, Meshi T, Ishikawa M. Coevolution and hierarchical interactions of Tomato mosaic virus and the resistance gene Tm-1.
  127. Krishnan A, Kloehn J, Lunghi M, Chiappino-Pepe A, Waldman BS, Nicolas D, Varesio E, Hehl A, Lourido S, Hatzimanikatis V, Soldati-Favre D. Functional and computational genomics reveal unprecedented flexibility in stage-specific Toxoplasma metabolism. Cell host & microbe. 2020 Feb 12;27(2):290-306.
  128. Stelzle D, Makasi CE, Schmidt V, Van Damme I, Trevisan C, Ruether C, Fleury A, Noh J, Handali S, Dorny P, Magnussen P. Evaluation of a point-of-care test for the diagnosis of Taenia solium neurocysticercosis in rural southern Tanzania: a diagnostic accuracy study. The Lancet Infectious Diseases. 2024 Jan 1;24(1):98-106.
  129. Moses HL, Phillips JK, Graig LA, editors. Biomarker tests for molecularly targeted therapies: key to unlocking precision medicine.
  130. Kafle A, Ojha SC. Advancing vaccine development against Opisthorchis viverrini: A synergistic integration of omics technologies and advanced computational tools. Frontiers in Pharmacology. 2024 Jul 15;15:1410453.
  131. Stutzer C, Richards SA, Ferreira M, Baron S, Maritz-Olivier C. Metazoan parasite vaccines: present status and future prospects. Frontiers in cellular and infection microbiology. 2018 Mar 13;8:67.
  132. Cui Y, Yu L. Application of the CRISPR/Cas9 gene editing technique to research on functional genomes of parasites. Parasitology international. 2016 Dec 1;65(6):641-4.
  133. Yan YH. Multi-Omic and multi-scale data integration for the characterization of malaria infection in non-human primates.
  134. Kang HJ, Chu KB, Lee SH, Kim MJ, Park H, Jin H, Moon EK, Quan FS. Toxoplasma gondii virus‐like particle vaccination alleviates inflammatory response in the brain upon T gondii infection. Parasite Immunology. 2020 Jun;42(6):e12716.
  135. Rao SP, Manjunatha UH, Mikolajczak S, Ashigbie PG, Diagana TT. Drug discovery for parasitic diseases: powered by technology, enabled by pharmacology, informed by clinical science. Trends in Parasitology. 2023 Apr 1;39(4):260-71.
  136. Bartelt LA, Bolick DT, Mayneris-Perxachs J, Kolling GL, Medlock GL, Zaenker EI, Donowitz J, Thomas-Beckett RV, Rogala A, Carroll IM, Singer SM. Cross-modulation of pathogen-specific pathways enhances malnutrition during enteric co-infection with Giardia lamblia and enteroaggregative Escherichia coli. PLoS pathogens. 2017 Jul 27;13(7):e1006471.
  137. Steiner S, Becker SC, Hartwig J, Sotzny F, Lorenz S, Bauer S, Löbel M, Stittrich AB, Grabowski P, Scheibenbogen C. Autoimmunity-related risk variants in PTPN22 and CTLA4 are associated with ME/CFS with infectious onset. Frontiers in immunology. 2020 Apr 9;11:578.
  138. Ashraf MA, Mustafa BE, Wahaab A, Batool H, Ashraf M, Said MB, Sevinc F, Stevenson NJ. Conventional and molecular diagnosis of parasites. InParasitism and parasitic control in animals: strategies for the developing world 2023 Jul 10 (pp. 56-72). GB: CABI.
  139. Panagiotou A. Single-cell transcriptomics of host-parasite interactions (Doctoral dissertation, Université Paris Cité).
  140. Zhang Z, Guo D, Huber ME, Park SW, Sternad D. Exploiting the geometry of the solution space to reduce sensitivity to neuromotor noise. PLoS Computational Biology. 2018 Feb 20;14(2):e1006013.
  141. Kang HJ, Chu KB, Lee SH, Kim MJ, Park H, Jin H, Moon EK, Quan FS. Toxoplasma gondii virus‐like particle vaccination alleviates inflammatory response in the brain upon T gondii infection. Parasite Immunology. 2020 Jun;42(6):e12716.
  142. Paredes-Santos T, Wang Y, Waldman B, Lourido S, Saeij JP. The GRA17 parasitophorous vacuole membrane permeability pore contributes to bradyzoite viability. Frontiers in cellular and infection microbiology. 2019 Sep 12;9:321.
  143. Nikulkova M, Abdrabou W, Carlton JM, Idaghdour Y. Exploiting integrative metabolomics to study host–parasite interactions in Plasmodium infections. Trends in parasitology. 2024 Apr 1;40(4):313-23.
  144. de Souza W, Barrias ES. Membrane-bound extracellular vesicles secreted by parasitic protozoa: cellular structures involved in the communication between cells. Parasitology research. 2020 Jul;119(7):2005-23.
  145. Valigurová A, Kolářová I. Unrevealing the mystery of latent leishmaniasis: what cells can host leishmania?. Pathogens. 2023 Feb 3;12(2):246.
  146. Yu X, Feng G, Zhang Q, Cao J. From metabolite to metabolome: Metabolomics applications in plasmodium research. Frontiers in Microbiology. 2021 Jan 11;11:626183.
  147. MacDonald AS, Araujo MI, Pearce EJ. Immunology of parasitic helminth infections. Infection and immunity. 2002 Feb;70(2):427-33.
  148. Lee HJ, Georgiadou A, Otto TD, Levin M, Coin LJ, Conway DJ, Cunnington AJ. Transcriptomic studies of malaria: a paradigm for investigation of systemic host-pathogen interactions. Microbiology and Molecular Biology Reviews. 2018 Jun;82(2):10-128.
  149. Machado FS, Dutra WO, Esper L, Gollob KJ, Teixeira MM, Factor SM, Weiss LM, Nagajyothi F, Tanowitz HB, Garg NJ. Current understanding of immunity to Trypanosoma cruzi infection and pathogenesis of Chagas disease. InSeminars in immunopathology 2012 Nov (Vol. 34, No. 6, pp. 753-770). Berlin/Heidelberg: Springer-Verlag.
  150. World Health Organization. World malaria report 2021. World Health Organization; 2021 Dec 6.
  151. Alvar J, Vélez ID, Bern C, Herrero M, Desjeux P, Cano J, Jannin J, Boer MD, WHO Leishmaniasis Control Team. Leishmaniasis worldwide and global estimates of its incidence. PloS one. 2012 May 31;7(5):e35671.
  152. Ospina-Villa JD, Cisneros-Sarabia A, Sánchez-Jiménez MM, Marchat LA. Current advances in the development of diagnostic tests based on aptamers in parasitology: a systematic review. Pharmaceutics. 2020 Oct 31;12(11):1046.
  153. Minghui Z, Kunhua H, Yunwen B, Hongmei L, Jing L, Shaowen W, Longqiaozi S, Chaohui D. Analysis of differentially expressed proteins involved in autoimmune cirrhosis and normal serum by iTRAQ Proteomics. PROTEOMICS–Clinical Applications. 2019 May;13(3):1700153.
  154. Kioko M, Pance A, Mwangi S, Goulding D, Kemp A, Rono M, Ochola-Oyier LI, Bull PC, Bejon P, Rayner JC, Abdi AI. Extracellular vesicles could be a putative posttranscriptional regulatory mechanism that shapes intracellular RNA levels in Plasmodium falciparum. Nature Communications. 2023 Oct 13;14(1):6447.
  155. Lustigman S, Geldhof P, Grant WN, Osei-Atweneboana MY, Sripa B, Basanez MG. A research agenda for helminth diseases of humans: basic research and enabling technologies to support control and elimination of helminthiases. PLoS neglected tropical diseases. 2012 Apr 24;6(4):e1445.
  156. Cortopassi WA, Celmar Costa Franca T, Krettli AU. A systems biology approach to antimalarial drug discovery. Expert Opinion on Drug Discovery. 2018 Jul 3;13(7):617-26.
  157. Coakley G, McCaskill JL, Borger JG, Simbari F, Robertson E, Millar M, Harcus Y, McSorley HJ, Maizels RM, Buck AH. Extracellular vesicles from a helminth parasite suppress macrophage activation and constitute an effective vaccine for protective immunity. Cell reports. 2017 May 23;19(8):1545-57.
  158. Howick VM, Russell AJ, Andrews T, Heaton H, Reid AJ, Natarajan K, Butungi H, Metcalf T, Verzier LH, Rayner JC, Berriman M. The Malaria Cell Atlas: Single parasite transcriptomes across the complete Plasmodium life cycle. Science. 2019 Aug 23;365(6455):eaaw2619.
  159. Oliveira TG, Venturini G, Alvim JM, Feijó LL, Dinardo CL, Sabino EC, Seidman JG, Seidman CE, Krieger JE, Pereira AC. Different transcriptomic response to T. cruzi infection in hiPSC-derived cardiomyocytes from chagas disease patients with and without chronic cardiomyopathy. Frontiers in cellular and infection microbiology. 2022 Jul 7;12:904747.
  160. Rodriguez-Cruz A, Vesin D, Ramon-Luing L, Zuñiga J, Quesniaux VF, Ryffel B, Lascurain R, Garcia I, Chávez-Galán L. CD3+ macrophages deliver proinflammatory cytokines by a CD3-and transmembrane TNF-dependent pathway and are increased at the BCG-infection site. Frontiers in immunology. 2019 Nov 7;10:2550.
  161. Diray-Arce J, Conti MG, Petrova B, Kanarek N, Angelidou A, Levy O. Integrative metabolomics to identify molecular signatures of responses to vaccines and infections. Metabolites. 2020 Nov 30;10(12):492.
  162. Mattoso-Barbosa AM, Sathler-Avelar R, Coelho-dos-Reis JG, Martins-Filho OA, Teixeira-Carvalho A, Vitelli-Avelar DM. Physiology and Pathology of Infectious Diseases: The Autoimmune Hypothesis of Chagas Disease. InPhysiology and Pathology of Immunology 2017 Dec 20. IntechOpen.

Regular Issue Subscription Review Article
Volume 03
Issue 01
Received 04/02/2026
Accepted 05/02/2026
Published 20/02/2026
Publication Time 16 Days


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