Advances in Biological Systems Modeling for Predicting Drug Effects in Chronic Disease

Year : 2025 | Volume : 14 | Issue : 01 | Page : 17 22
    By

    Aditi Arvi,

  1. Student, Faculty of Biotechnology, University of Allahabad, Allahabad, Uttar Pradseh, India

Abstract

Biological systems modeling has emerged as a promising tool for understanding and predicting the effects of drugs in the treatment of chronic diseases. Chronic diseases, such as diabetes, cardiovascular diseases, and neurodegenerative disorders pose significant challenges to traditional drug development due to their complex, multifactorial nature. Systems biology approaches, which integrate computational modeling with experimental data, provide a holistic view of disease mechanisms and treatment responses. This review explores recent advances in biological systems modeling, focusing on its application to drug development for chronic diseases. We discuss various modeling techniques, including mechanistic models, network-based models, and machine-learning approaches, and highlight their potential to predict drug efficacy, identify biomarkers, and optimize therapeutic strategies. Furthermore, we explore the challenges of integrating heterogeneous data from genomics, proteomics, and clinical trials, as well as the opportunities for personalized medicine. The review emphasizes the need for more refined models that can capture disease progression and drug interactions over time. In conclusion, biological systems modeling holds great promise for enhancing the efficiency and success of drug development for chronic diseases, paving the way for more effective and personalized therapeutic interventions.

Keywords: Biological systems, machine learning, chronic diseases, proteomics, genomics

[This article belongs to Research and Reviews : Journal of Computational Biology ]

How to cite this article:
Aditi Arvi. Advances in Biological Systems Modeling for Predicting Drug Effects in Chronic Disease. Research and Reviews : Journal of Computational Biology. 2025; 14(01):17-22.
How to cite this URL:
Aditi Arvi. Advances in Biological Systems Modeling for Predicting Drug Effects in Chronic Disease. Research and Reviews : Journal of Computational Biology. 2025; 14(01):17-22. Available from: https://journals.stmjournals.com/rrjocb/article=2025/view=194691


References

1. Alon U. Network motifs: theory and experimental approaches. Nat Rev Genet. 2007;8(6):450–461.
2. Barabasi AL, Oltvai ZN. Network biology: understanding the cell’s functional organization. Nat Rev Genet. 2004;5(2):101–113.
3. Shankar S, Muller R, Dunning T, Chen GH, editors. Computational Materials, Chemistry, and Biochemistry: From Bold Initiatives to the Last Mile: In Honor of William A. Goddard’s Contributions to Science and Engineering. Singapore: Springer Nature; 2021.
4. Kunwar A, Priyadarsini KI. Curcumin and its role in chronic diseases. Adv Exp Med Biol. 2016;928:1–25.
5. Aggarwal BB, Sundaram C, Prasad S, Reuter S, Kannappan R, Yadav VR, Park B, Kim JH, Gupta SC, Phromnoi K, Sung B. 14 chronic diseases caused by chronic inflammation require chronic treatment: Inflammation, lifestyle and chronic diseases. Silent link. 2011:373.
6. Salo-Ahen OM, Alanko I, Bhadane R, Bonvin AM, Honorato RV, Hossain S, Juffer AH, Kabedev A, Lahtela-Kakkonen M, Larsen AS, Lescrinier E. Molecular dynamics simulations in drug discovery and pharmaceutical development. Processes. 2020;9(1):71.
7. Coveney PV, Dougherty ER, Highfield RR. Big data need big theory too: Philosophical transactions of the royal society A. Mathematica Phys Eng Sci. 2016;374(2080):20160153.
8. Taj F, Stein LD. MMDRP: drug response prediction and biomarker discovery using multi-modal deep learning. Bioinform Adv. 2024;4(1):vbae010.
9. Thomford NE, Senthebane DA, Rowe A, Munro D, Seele P, Maroyi A, Dzobo K. Natural products for drug discovery in the 21st century: innovations for novel drug discovery. Int J Mol Sci. 2018;19(6):1578.
10. Nair PC, Miners JO. Molecular dynamics simulations: from structure function relationships to drug discovery. Silico Pharmacol. 2014;2:1–4.


Regular Issue Subscription Review Article
Volume 14
Issue 01
Received 23/12/2024
Accepted 11/01/2025
Published 20/01/2025
Publication Time 28 Days


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